NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10710200

Scaffold Ga0311301_10710200


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10710200 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1410
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003851Metagenome / Metatranscriptome465Y
F015067Metagenome / Metatranscriptome257Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_107102002F003851AGGMKHRKQAAVASRTIDEDAKRVLRSLEEATHNHVNTNDPITEQLKQCPEAFKVGEILGKAFDSLKYAQDGAEPGDRYLPPSGVVIPPLV
Ga0311301_107102003F015067N/AVIGLPLDVTFPRLKGIRWRYCTRWDEGPAAVLGMSMLRLGICRPDDWSGSAVDFVERGFRRFCSRNRAVEAKRVWVGDLRITDSLFELTEQERNQVEAGREGMTDHLYLVGDYEAAASIPIGATLARLETENDLLPAAFYQVLTTNLYKWMRVYDYLDGQEHAEMWMEDLNDEELEASVYRKVDLEIPACIKRHAKTLKYGRARNLLQGVTPHTRAARELVRRLLEMDAHGQGQEHAWPGQISEKDVPGIDDWLMDAENSRPGCLITWYENDAINACFD
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