NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_11164755

Scaffold Ga0311301_11164755


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_11164755 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)993
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001672Metagenome / Metatranscriptome654Y
F093068Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_111647551F093068N/AMFKRRAELTDEKGAVVATFNETCHDYGTTLATVKLRAPFTLQGTENLAIFAKGISQPVISVEASDPAGTEICEFHGTSAIGCVPDGTGVSLVKSPGGDLGTLLIVLATGIVT
Ga0311301_111647552F001672GAGMSKRTREKKRKAQSLEQLAKPDEISIGRRFAQSFGKARLLIGHPHSYREWNIVGHCDVPGFFYLESRFRLNPGEQPAIYTAFELCLHESQFERL
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