Scaffold Ga0315301_1028987

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315301_1028987

Scaffold Ga0315301_1028987

Overview

Basic Information
Taxon OID	3300032161 Open in IMG/M
Scaffold ID	Ga0315301_1028987 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB4_Tmax_934 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	801
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	75.0007	Long. (^o)	-150.0027	Alt. (m)		Depth (m)	497
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003733	Metagenome / Metatranscriptome	471	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315301_10289872	F003733	AGGA	MKTLRTKICTYAIALLASIGFATATLAGSSDFSGVWIAAHAELNVVAIDGSSTTPGQGVTVAGTGGSDDTETTQGTIGGFAPTAGYEIGFNLPLGDTFFITVGFADGGGESAAIAKVDDGAPTSGTDVSLHASNPSWWYIAPSISIFDNSAVYFKIGQAHADLTAIGDVTGGPGNLEGDMWGIGTTSIANN

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