NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315281_10000008

Scaffold Ga0315281_10000008


Overview

Basic Information
Taxon OID3300032163 Open in IMG/M
Scaffold IDGa0315281_10000008 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)324952
Total Scaffold Genes352 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)255 (72.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5099Long. (o)-110.3581Alt. (m)Depth (m)87
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003098Metagenome / Metatranscriptome507Y
F009011Metagenome324Y
F032903Metagenome178Y
F089857Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0315281_10000008139F032903GAGGVVFFRMVHEAVCSERRFLIPDAKVDDVASVCHKAFKEMGLRIMESEKTRDGSTTVLAGEGALVPLTLRTLLYPFSLQQYVKAAQRSGVHVVLSSSEGDVILYSCGLVLDELTGKPAEHVSDEDVEDVTGTLEALDFESKFIKKIKAIFPKTKETE
Ga0315281_10000008273F009011GAGLVSLTDWAAVISAVTGVSAAVFILLQLRHMEQHRNMEISMKLFEWAESDRLRKAFRWVEEKFQFEDYAKFSAQEKTDVEVGDYPYEVTAFFEQVGFMVAKKFVDLDVIVDRLGNYVVSNWKKLEPWILALRKEKSDAAFGEHFRKLYGKAVEYLRESHGCTSSVEDSLTQVAR
Ga0315281_10000008347F003098N/AMKFVFEFPPIHGVFDTGYGVVYVFGGLHESEIENILVHETLHYVLLKVAGKKASLRLDRIYAQLDEESDC
Ga0315281_1000000871F089857AGGAGMGPDEKYGKRRQITFRIGPLCQERLARAAALFNLKSCEYVKAILYRDLAIFDEPLDQRRSAWKKQQRQRLEDERGQDEGEL
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