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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032163 Open in IMG/M |
| Scaffold ID | Ga0315281_10002465 Open in IMG/M |
| Source Dataset Name | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 27462 |
| Total Scaffold Genes | 33 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (81.82%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5099 | Long. (o) | -110.3581 | Alt. (m) | Depth (m) | 87 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000512 | Metagenome / Metatranscriptome | 1064 | Y |
| F000696 | Metagenome / Metatranscriptome | 931 | Y |
| F000885 | Metagenome / Metatranscriptome | 849 | Y |
| F002750 | Metagenome / Metatranscriptome | 533 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315281_1000246518 | F000885 | AGGAG | MTNPKVVFAGEIAQLAGVVAVVAGLVMSLHHWPVAAALIGGGVAFLVGKKLRGVL |
| Ga0315281_1000246520 | F002750 | AGGA | MIRWIKEMLRSRYVRTLEDDVARLRAENRALVNSLLGTAGFPPVDFPEAVKPRELPRLRRRSWHQLQALREREAAEQRTEAE |
| Ga0315281_1000246529 | F000512 | GGA | MRSMTIQIGREKYEAPETVARVLRLAGGVNRFGEANYRAVWGWNRLAWIGGKFEERDPATGALLREVVELRREPKYPQVNRWHIERWLPPEAYGSPRAWYAETVERANGESVAALGPYPSRGDYEHCFTLEGPRGEFVQLTATIAERIARAIEWSRCQPRAARRESIGERERREERAYERWAYGALDGGAPAFGGEEFVSVR |
| Ga0315281_1000246531 | F000696 | GAGG | MPVVGSSAYNTAGQITSLVRSLLNDAQGNLFTDAVLLPYANAAYRGVQRALANAGAGGFMTDNALLVVAAVSAVDASLQVAITDATAPPNQLPTDLLAPLKLWERPSGSAQEFLEMADLTRHGGLPSEPQGAALSVWEWRADGLYFIGATQDTQIRLRYIKSYPDLTDAASPVLVRHAQEAIAYGTAALAGWARGSPLAEKWDEAARDAVEDLVTAAVRREQQSARRRRPFSSRSGYGTI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |