Basic Information | |
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Taxon OID | 3300032164 Open in IMG/M |
Scaffold ID | Ga0315283_10106514 Open in IMG/M |
Source Dataset Name | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2941 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wyoming | |||||||
Coordinates | Lat. (o) | 44.508 | Long. (o) | -110.3268 | Alt. (m) | Depth (m) | 93 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F054395 | Metagenome | 140 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0315283_101065142 | F054395 | GGA | MVKRCDQPVDLLIGPIVDQIGVGELWEGRFHCGCVLDGTLFDAMAVVRQEAGESLLEGLDVEDGDGKGADATVGAAKPAGHFIEQGGGCPFEPIGCFLIQRSRVGRSWTCHGGSFYFNGEVDDEIAFG |
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