Basic Information | |
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Taxon OID | 3300032169 Open in IMG/M |
Scaffold ID | Ga0257195_10086201 Open in IMG/M |
Source Dataset Name | Metatranscriptome of plant litter fungal communities from Pinus contorta in Bitterroot National Forest, Montana, United States - GP2-LITTER (Eukaryote Community Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 866 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Hordeinae → Hordeum → Hordeum vulgare → Hordeum vulgare subsp. vulgare | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Decayed Wood Fungal Communities From Pinus Contorta In National Forests From Montana, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Montana | |||||||
Coordinates | Lat. (o) | 45.755 | Long. (o) | -113.9106 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F079571 | Metagenome / Metatranscriptome | 115 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0257195_100862011 | F079571 | N/A | PLLMDHLDNTPLPDYHGSDSNALGRYDYTLSGIRLATSGLIPDKIKVEFRYKAEANPSKLRMEKQHMLMYLEASDIQVSFKDVKWVYNRHTIPRFSDNGTIDFATAGKGITLRLKAELHDYQAPQHAHSLGDLLAEPKETRMFSVLRADCDIDDFHVRISDTGASNVFYEMLAGIWGTKIKHQIENLIESKMDLLAQKFDVQLYDVVRRATQPSLAEETKEALLSAGQAAGERIKDAAADAKASIQSL |
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