NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315268_10106468

Scaffold Ga0315268_10106468


Overview

Basic Information
Taxon OID3300032173 Open in IMG/M
Scaffold IDGa0315268_10106468 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2645
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5106Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057304Metagenome136N
F058930Metagenome / Metatranscriptome134N
F088757Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0315268_101064681F057304N/AARPFPSTNAVVLSIFASVLFLSGVAVAWHPEITELFDVLQAPKLRIALRILAFGFFSCYCTLGSLCRILIQFFPEKFGQDQGHI
Ga0315268_101064682F058930GAGMKTLMPKLLIGLCALIFLASPHLALAQTQGGLTVDNFNDAANESSGLTSTFYTVTHYALYIFYCLGIIFMGIAAVKFKGGDMEAMGKNLGGSVMLFLVPKVVETLITWAAK
Ga0315268_101064683F088757N/AMSPKQAVKGVTLNLPGILAVLTGTRARDWKLRDGPDSSCGVDYYYGHRQGNEAYINVDQGHFTISVAGETLFSGDPAVHPRLKRYVSEG
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