NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307470_10000088

Scaffold Ga0307470_10000088


Overview

Basic Information
Taxon OID3300032174 Open in IMG/M
Scaffold IDGa0307470_10000088 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)64154
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (55.88%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002338Metagenome / Metatranscriptome569Y
F024882Metagenome / Metatranscriptome204Y
F051251Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0307470_100000884F051251AGGAGMSNTTPVTPNPDPARLAPEDVIAQLRTMRSQIDVVAPLSKEQRRLVKQRLRRQPKTIVEAAINVIGVLGNVSEAIGQPLDEVRQWQDDSLRWDAVADEARAFLKDIEGANLNRSQRLALVGMQAYAIGTQLARDPANAVLVPHVEEVKRLKGVSRRKKTKQVPPTPAPALEASTASKDLE
Ga0307470_1000008842F024882N/AMPCDHIGPAELIDMAEAQLRERGVRPEAGMRFRWSENPVDGMWASIVTEIERRGEQWIVTRLDRNREPLPVDETGFRAL
Ga0307470_1000008862F002338N/AMQELKAEKPPESPAGSDPTSRLMARLEEEGFTTDLTDDDWRNYGEIIFRRPEKIAFASGETIFIFTRVLDLNERILHQTSESVVNAYKARSLGGKALSVLQSTTVYHCLVAEGDQPHNDLLTGYVTRSGGATFIPVIIVPEINQVIYPNLEEKVASVRPRIEYLQYLLGERLESVDMHRPTVHAMWISLAVVVVLLLAIVVSAIR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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