NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307470_10036657

Scaffold Ga0307470_10036657


Overview

Basic Information
Taxon OID3300032174 Open in IMG/M
Scaffold IDGa0307470_10036657 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2391
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002853Metagenome / Metatranscriptome526Y
F007488Metagenome / Metatranscriptome350Y
F009917Metagenome311Y
F015771Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0307470_100366572F009917AGGAMGSSGWTYVVVVFSMGAQLVVFLRWMHRRMRDDEIQRVFVRDLALRHLPNIYRALHIIAEQQGIKLEEMPMVNYVDLQNGGRHR
Ga0307470_100366573F002853AGGTGGMEGLTPRRGELQRHWEEIMGRGAQGQTQSLTDNQLNQTNALNQQLLGQQQSVGNLLTPQFQSILNNPGFSAADKAAITGQSQGALASAFDSLQQSATNRAARTGNSAGFSELTDQLARQKGVAEGNLAQQNQLNFSNTAFQRQMAALQGLSGLFGVDSNLLGKTLGIPSELLNVRANASRNNGGFFSTLGSSLGGALGGVPGLFL
Ga0307470_100366574F007488N/AMAMKIRAYEESDLDALRAIHARQGFGYAFPDLGNPLFLTKLVLGREEGGKGIAGAALLRLTAEAYLLLDPEAGSPREKWQWLLGLHEATRCDALARGLEDVHAWLPPEIGTKFGRRLSRLGWIRDDEWTPYCKRLEPAVAIADGARR
Ga0307470_100366576F015771N/AAANGWFDLAITDPAVTRPGLFYFAESDVTPAFSAPRVYFLGASRNLYVQLGNQTLYWRAYSQYVGSLASAPVTFGSPATAVAGGGTSGPAPLPSSGSGALPNGLLRGGNGFGVVPGARVVKQTVL
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