Basic Information | |
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Taxon OID | 3300032180 Open in IMG/M |
Scaffold ID | Ga0307471_100010052 Open in IMG/M |
Source Dataset Name | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6312 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Indiana | |||||||
Coordinates | Lat. (o) | 39.0844 | Long. (o) | -86.4705 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F061740 | Metagenome | 131 | N |
F085506 | Metagenome / Metatranscriptome | 111 | N |
Protein ID | Family | RBS | Sequence |
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Ga0307471_1000100521 | F061740 | GGAG | VLLSQSAFARADHIQVPSYRGMETTESRTVTTNPLSGMLVYRIEYKGDLAVAYRICYDQEEPFPFAIADFAHDALYFDRDRDGHVDEVIAPARLANRSLTDDLPRCPPKPEKP |
Ga0307471_1000100523 | F085506 | GGAG | VGRRHIILVGLTAAVLTGLSGCGSFGTASQTVYQDDTLRVFLDADPTATSGRSVSNDHPVSLETPQISLLLKGVEVERPPGLLKSLVFGPAREAAFSKDEIMALAPQLKEAFVRATPKERVSFALMRSSSAQGSELTAGAVWVRGRGFHIVLNRYRSPTDKKWAGIPGPYDSAFARGRLTPPEVRPDFTVLFSLSSYVIKQDPGLATEMFASPETELVIDYQRLFADATRAPEKTLVVAPTEDKRDAMGSGVTAVAPAGEGGLSDRSDRLAESQATVRALTDRVNRLESQVTDLLDIVKRLTGSLEESRRALAEKDKEIRTLQSAPGAPK |
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