NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307471_100050550

Scaffold Ga0307471_100050550


Overview

Basic Information
Taxon OID3300032180 Open in IMG/M
Scaffold IDGa0307471_100050550 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3426
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004422Metagenome / Metatranscriptome439Y
F065162Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0307471_1000505501F004422N/ASESHIPDGPAGVGGRALTNEYFTASWYELQIVLNSGNHQHRDRGPVDWVYLIGRFPDLYAQTHQPEPMRLLVAVTKALQSTDPHLGPDDLRQGWRPEQNIDPRIMISPAWVAIFRPLPIEVHQALTASLLAAWMDKNLQYPIAKYLPIGLSPRAYTPNRAYGDITGGKAWEAAQEFRNAGVAAELVELLQQWGIAFIDRAARIRYE
Ga0307471_1000505503F065162AGGAGMPPNDDYPDDHSFERALCEYRERSWCPDDFADLPTDVQCDIIKRACQIQAANDRLNELIQAA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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