NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307471_100234539

Scaffold Ga0307471_100234539


Overview

Basic Information
Taxon OID3300032180 Open in IMG/M
Scaffold IDGa0307471_100234539 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1872
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043570Metagenome156N
F063510Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0307471_1002345392F043570AGGAGGMAKKIREFMTHRDPDEHIWVEREESAVIGTARMGQRLVPKIRPFDLLRSAPHSGNRAQVMVWEGDTLRIAVENLSGLEEQLTRASDHDLVYFQFCGRSTIESECGVVELEPGEFVLVPAAISHRSTGKDDCLRVRVATRELVSLGVDPEKPLVESKFNVRPSEPFTQPGNGRQDAQNGHVLEHITFWDPQSDVWIERDPAALIGTVTDGSRPFKKIRGFDYFTGMTGKGGAKAPILYNGKEFRIDVYNLEEEQRGFHRGCDEDEIWFQFRGHSLNHTEWGAMELDAGQTAMIPRGIAHRITGSPGFLRMVFYSRGLVQPRAFNNVTERETRFDVQ
Ga0307471_1002345393F063510N/AMQGGQQAVDIVALFLAPFFAVMTAFALAAFSPLNRIMRPIRFFLFACIGGVVAAMILIVVGLLGKISSGVWRFDLVTSFIGCAVIGLSQFWSSETIVDKKKDERIHKQDSGWF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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