NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307472_100010973

Scaffold Ga0307472_100010973


Overview

Basic Information
Taxon OID3300032205 Open in IMG/M
Scaffold IDGa0307472_100010973 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4553
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000466Metagenome / Metatranscriptome1105Y
F061209Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0307472_1000109733F061209GGAMKALFLSALLVAGFVPGATAQQTTGPIAITNKVNGIPITVSATSWVTTSSVGSEPRIQARIFADLIDLQRKFASVVDAFKLPANSCVNRASGHQNQVVSFKAGALVPVDDRLVMSVRGDVDVSSCVAGPAQSAIQWRKKKVWFLKIKVPERHTWRNMKERKDGAQSFSGSLPIQLVKKDDANVALKIAEADIKMEGQESSAKNANMNLAKAHINQKAYNTLQSAIDPAKLKMALPKEFQKLNMAVVSTRFRSYGGHAIAEINLAAENPAYTQ
Ga0307472_1000109738F000466AGGAGMAHVLAYLPKVENWKNWKNEKRLPYQGVVKHDWVPTGRIDFATRLNGSAEDAEQPSEFKLLVEERRIVESIAGNENLEIQWRLATLKEAKAVVTQYHKYLSENALIKSVFDDTIALPPPKKNSANSSE
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Biomedical Sciences Research Center "Alexander Fleming"
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