NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307472_100133600

Scaffold Ga0307472_100133600


Overview

Basic Information
Taxon OID3300032205 Open in IMG/M
Scaffold IDGa0307472_100133600 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1780
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003359Metagenome / Metatranscriptome492Y
F015912Metagenome / Metatranscriptome251Y

Sequences

Protein IDFamilyRBSSequence
Ga0307472_1001336001F003359N/AMLPGSFVENKRSCGRPNCHCADGKSLHTQYQISVLVDGKPKTFHVPKGMVDQVREKIQLRQRFEAAVAAIGKINLRRFLKEREKS
Ga0307472_1001336003F015912GAGLLTESERVISTVAAEKMDDHPELQLWHAPEVYWPVADRAVRVVKTVRQQPVKRLRVERDEQGKKRAVKETVLEPSTNFYASNLELGSVQPVFIHQLGRSRWIIDTTVFQTMTTEAHLKRPSVHQDRAKALIVLTMIRVLAYTLTLVFFFRQVRSHFRKCSLGFSDLAQKLAYWFAVLQADSS
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