NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307472_100134645

Scaffold Ga0307472_100134645


Overview

Basic Information
Taxon OID3300032205 Open in IMG/M
Scaffold IDGa0307472_100134645 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1775
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026146Metagenome / Metatranscriptome199Y
F094318Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0307472_1001346452F026146AGGAMFVKFLPYWLTPAILKAAAVMACMLFVVSYAVDLALLSLDVSPASTILNDIAIAMIATGVMLFYLFSTHTEQIFLRAKERMNLTAELNHHLRQALLEFRSAADVEDREERLRMLDQAIENVDHLLIDLVPTANADVSPRCNRHG
Ga0307472_1001346454F094318N/ATKNQNGNGTAIALPIRVRPEHIPWYEEAMTLEVSRDKLKFLTNREYTFGQSLLVSFASWSEAPWSGDGEWQTQVTGIEMEAGSESLCITLRRKSP
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