NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316187_10000338

Scaffold Ga0316187_10000338


Overview

Basic Information
Taxon OID3300032231 Open in IMG/M
Scaffold IDGa0316187_10000338 Open in IMG/M
Source Dataset NameCoastal sediment microbial communities from Maine, United States - Cross River worm burrow 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35423
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (80.56%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Maine
CoordinatesLat. (o)43.917Long. (o)-69.6219Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031502Metagenome182Y
F046383Metagenome / Metatranscriptome151Y
F054877Metagenome / Metatranscriptome139Y
F105203Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0316187_1000033810F031502N/AMINKRSDFGERRQDKDMPKVPFKDSHGVTIKGCRRKIPDRRIGNIQDEWLDTKWIDNYQ
Ga0316187_1000033818F046383AGGAGMKKYLSVFVASLFVLASQMALACSPEQDGCLGCNDEELSVCLQEFVQNVCQSSGNLVNCDAVRVYDDAERYILTSTGSHMIRTRAMFRSSRKYQLH
Ga0316187_1000033819F054877AGGAGVKKRRNLSVLARFRPMTTDDLDSELIYLVGEEAEFRYHKFVDEDDTPYSDQWVLTAEDQRFGDYWFPESDLEILQEKHFQ
Ga0316187_1000033832F105203GAGGMQQTKHAEQMVSRFRELVEDAGDSLSSNHYNELKLIIEAGLDTALLENMGRVTEKLTRLAHDIQHDARFFD
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