NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316208_1013321

Scaffold Ga0316208_1013321


Overview

Basic Information
Taxon OID3300032254 Open in IMG/M
Scaffold IDGa0316208_1013321 Open in IMG/M
Source Dataset NameMicrobial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month chalcopyrite
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3783
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Maine
CoordinatesLat. (o)43.8603Long. (o)-69.5781Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017488Metagenome / Metatranscriptome240Y
F052627Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0316208_10133217F052627AGGMAIRDDLITQITTNIAAHSNVSISQELPFDQSGVPLYNKNMGTIYVDEQDIVVEQLYRTLDQGEVNQSTTTVNAYLSVDAKNEYSDINTVVANLLIARNVVTNVLDKNSDYETDMVDDVITYTFEYNFITV
Ga0316208_10133218F017488GAGGMAFITDGGGDVISFAENTDLRQKDQKFFESNNIKIPEESGFATLTDYFEDLCEKSTDRILLKLKASTWWQSYNAYVGTPITNLNALPNVNPNRIDPGNTLGRQQQFTDMCVYYTFSQFLFPLVADFGNPESEEVSKITYYDAKYNDLFNELISIADWYDADGDGTVEDSEKAVSYMRTRRSRSRRSVVPIR
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