NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316191_10895212

Scaffold Ga0316191_10895212


Overview

Basic Information
Taxon OID3300032258 Open in IMG/M
Scaffold IDGa0316191_10895212 Open in IMG/M
Source Dataset NameCoastal sediment microbial communities from Maine, United States - Eddy worm burrow 2 cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)643
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Maine
CoordinatesLat. (o)43.9948Long. (o)-69.6486Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016797Metagenome244N

Sequences

Protein IDFamilyRBSSequence
Ga0316191_108952121F016797N/AMDSLEILKAKINLQTTIIKFTSSIEELQSKHPERKDLIDSMLDSLEDISQFQSVFVQFEDQYLLECKSNLRLQMVISEQKHELDKLNILVENLKEGI
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