Basic Information | |
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Taxon OID | 3300032262 Open in IMG/M |
Scaffold ID | Ga0316194_10651861 Open in IMG/M |
Source Dataset Name | Coastal sediment microbial communities from Maine, United States - Cross River sediment 1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 663 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Sediment → Sediment → Sediment Chemolithoautotrophic Microbial Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Maine | |||||||
Coordinates | Lat. (o) | 43.917 | Long. (o) | -69.6219 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F021303 | Metagenome / Metatranscriptome | 219 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0316194_106518612 | F021303 | N/A | GQKVTDPAKFSCIVLGMADQSISTDVLHLRASVLDHSSEFVELVYRTVPAEYQKLLASERFQRELGQESVFNHGKLFAYAEFVVFRREFLERFPDASPAACINAFSSLFLKNDISITNLVDFVEGPDDRNQLLLNQPIS |
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