NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316203_1010062

Scaffold Ga0316203_1010062


Overview

Basic Information
Taxon OID3300032274 Open in IMG/M
Scaffold IDGa0316203_1010062 Open in IMG/M
Source Dataset NameMicrobial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2944
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Maine
CoordinatesLat. (o)43.8603Long. (o)-69.5781Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005590Metagenome / Metatranscriptome395N
F009460Metagenome / Metatranscriptome317N
F051865Metagenome143N

Sequences

Protein IDFamilyRBSSequence
Ga0316203_10100626F051865GGAGMTKTTWIALMVFSSPYECADFIEKYKANLYGPVQCVIQYEETNTVRPKRKPMQEKNNG
Ga0316203_10100627F009460AGGAGMAKWDLTKIENCSTVGDYIDEDDTQPDQPTPLMIVRSINRKADILRMDAGRGPERCTMKQRAEEIMVLCSMLEERL
Ga0316203_10100628F005590GGAMSEHMTPLDRWKEMATIENARMHRRMIGRDDMHPYAHKAWAIETLRKEIERCLNRHGELSVGDLCSMIEQDVTHIDLGLKTLQERRRIVKTSYIHGQQLYRVSTKDERRL
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