NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315270_10001788

Scaffold Ga0315270_10001788


Overview

Basic Information
Taxon OID3300032275 Open in IMG/M
Scaffold IDGa0315270_10001788 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottom
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11408
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5106Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065754Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0315270_1000178810F065754GGAMPLVGFRPTKARLIIEDSRATVLVMKVVVYKGDTIRLAAGDLLEELTGVLRIRERKENGARSGGVDPGTLVYIEESGFGNDLAPAKYQINIAISSQKFDTLVRLAMSGRLPTKFFVEAGERISRTESRGLKYEMRGGTRVKFWDTAAHRTLLVTNFSFILPIDVAESRTEESGVHETDPGPSPATNAQVAELIDDLLVFHGETKNTLLAVLGIVGVLALAALVIALVLFQRA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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