Scaffold Ga0315270_10200331

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315270_10200331

Scaffold Ga0315270_10200331

Overview

Basic Information
Taxon OID	3300032275 Open in IMG/M
Scaffold ID	Ga0315270_10200331 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottom
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1224
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5106	Long. (^o)	-110.3566	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014274	Metagenome	264	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315270_102003311	F014274	GGA	VNVLICDLKHPLLVIAPSFDVTIGVLHAAVAVAEPRAAVISEADGLHPRVTEAGIIIIEGGLGALNQVTVLVTVAVLPQASIAVNVLVCEEEQVEVNTAPSVNVIVGIPQPSVAVADPSAALISEAAGLQPSGTVV
Ga0315270_102003313	F014274	N/A	VVIAPSLDVTIGVLHAAVAVAEPSAAVISEAEGLHPRVTEAGVIIIVGGLGALNQVTVLVTVAVLPQASTAVKVLICEEEQVLVDTAPSVNEIVGTPQPSVAVAVPRAAVISEAAGLQPSGTVV

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