NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316202_10057497

Scaffold Ga0316202_10057497


Overview

Basic Information
Taxon OID3300032277 Open in IMG/M
Scaffold IDGa0316202_10057497 Open in IMG/M
Source Dataset NameMicrobial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1818
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Maine
CoordinatesLat. (o)43.8603Long. (o)-69.5781Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004523Metagenome434Y
F011658Metagenome / Metatranscriptome288Y
F070571Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0316202_100574971F004523N/AIRSAREAMTIFKILGIKDVTTDRQRKNGTTVYELPISQVWQTLNPKPIRFATYTTGYVRNVTEGLSSSYQINKTKKVSTRTSGYAYDTIERILIHDWEERIIYLAKFIIKNYYQKTTYVMSDYVMDCLREAYVRDYNNKPSNRLPFGDEVQVIVNGHRYNLS
Ga0316202_100574973F070571N/AMTKEELQVKIGAIESMISDSNIEISKYAGQLEDLRKQLADLNKPKLTMKQFDELTELVEHGIEEFDFDDLDNYSIDYGIDYDNRVTCESFCFDNVSEVARVVCEKIYTMFAEANEDTNQLNQD
Ga0316202_100574974F011658N/AMKTLYQQLKPEVKQSLNEQEELYPTLVKDIKCALQENYLWSHLSIGQARELISFTSISLSSMSSYDWSYGEKFLVCED
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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