NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316202_10089966

Scaffold Ga0316202_10089966


Overview

Basic Information
Taxon OID3300032277 Open in IMG/M
Scaffold IDGa0316202_10089966 Open in IMG/M
Source Dataset NameMicrobial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1423
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Maine
CoordinatesLat. (o)43.8603Long. (o)-69.5781Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036970Metagenome / Metatranscriptome169Y
F048232Metagenome148N
F090273Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0316202_100899661F036970N/AVNRAIVAEMAMQKKTQKDLAEVLQIHPVTINRKLKDPGTFFLSELGQICETLNIDLKNPPNYGTGAN
Ga0316202_100899663F048232N/AMRTDITYEERVARIMFLREHRRNLLQAYCKDDVTKKEKDKLRQETARVQKALKKLDPDGMFPP
Ga0316202_100899664F090273N/AMKYWFEVEDAQRWGLSAAAVLAHLKYWIARNTEAGEDPCMTQSIARMQGHLPFLTFDQIRRALSKLEKGDAIYRKANGFDRRHTYCLAELPHASGEIATSKRQECHNEERNLPRVHIETNTSKRTR
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