NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310345_10002459

Scaffold Ga0310345_10002459


Overview

Basic Information
Taxon OID3300032278 Open in IMG/M
Scaffold IDGa0310345_10002459 Open in IMG/M
Source Dataset NameMarine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18683
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (76.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location NamePacific Ocean: North Pacific Subtropical Gyre
CoordinatesLat. (o)22.7719Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010167Metagenome307Y
F013820Metagenome / Metatranscriptome268Y
F015741Metagenome / Metatranscriptome252Y
F025051Metagenome / Metatranscriptome203Y
F036736Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0310345_100024592F025051N/AMSKNINLEIAGSNTLSRTACALLLPLTILSNKNNEIDKEEFINAVSWIKDYRTWNKYWNELEKNNVLVQLDTKKWMVCPHMCYSDGVSHNELITKWNEVSNAIN
Ga0310345_1000245920F036736AGGVDKLNEMLIGVLAVIGGFVTKRIFNNHDTLSNRITALEKVMLTKEDISSLERNMEMVVEHLINLKK
Ga0310345_1000245921F013820AGGAGMVPTIVGLIDKLMPGGKTYALMGLGILMMVCQMGGWHNFSQEAWGLLGIGGAATWKMGQDRK
Ga0310345_1000245923F015741GGAGMKLKLKSGLVAVCLMFLTGCSSIPWVSFLAPTANFALGFYDHNDYYSKECLWYDEVKLNDETKEWFRDSNPPEIVSQDLATVSRNNDIYKEVCKEAKSVADKLTDKIDRIIDSP
Ga0310345_1000245929F010167GGAGMIFTHASMIQEGESALFYRFSRPLKGYMIAGLFIAPNMTAKLNFVKVWKYFVSEIVQADDIYASIPLGVTSSMFENYMEYHDTINGFKIYKVDKFLKKQYSNYDKHIERAGTSS
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