NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310345_10003127

Scaffold Ga0310345_10003127


Overview

Basic Information
Taxon OID3300032278 Open in IMG/M
Scaffold IDGa0310345_10003127 Open in IMG/M
Source Dataset NameMarine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16025
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location NamePacific Ocean: North Pacific Subtropical Gyre
CoordinatesLat. (o)22.7719Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001625Metagenome / Metatranscriptome661Y
F005948Metagenome / Metatranscriptome385Y
F064804Metagenome128Y
F073660Metagenome / Metatranscriptome120N
F084350Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0310345_1000312710F084350AGTAGGMAIATYSSIDDMIDMIKSKWNTSTGGVTPRIERIWDEKTIGFGDMELKKGIILIEPMDEGVTYFGLYGVDHMHNVDLTLDVRSYQNIDRHSEIVGELSRIIKDQIRRSTFVDLRITGTVPLSRLYRNMFRHMIRIRYRKMNP
Ga0310345_1000312713F005948AGGMVELNHNIVSFNSDTLIKGDHGVLVAVFVTKKGTGSNKVEFRNGTTASATPVECTIFTAIEGNYQNIHRRFENGIFADCDGAAEVTVVFK
Ga0310345_1000312715F001625N/AMSMALTISTSDWTGANVRKTLSWQAALVSKLRVYAIKVTFGASDNYATGGVSADLKEGRVSTLVAVIPTYTNSLREVVYDKANEKIKLYDVGGSATTPFTETPNTSSACASKIFEFLVIG
Ga0310345_1000312716F064804GGCGGMDVRKNTDMVMVHHADKLAKARDLIIIFLFGSILIETIANVELLGSWWK
Ga0310345_100031278F073660N/AMALQSFSIKFKGVDHPVEFEDDMEFGKFEQIIQKCSNFAEGSNPVDNVQNYRKEIMLNSIKKAPFEISESGLNGLGYKTVSLIADKILEAYPLGNYLNQMMKPFEDSMKKIN
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