NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310345_10021288

Scaffold Ga0310345_10021288


Overview

Basic Information
Taxon OID3300032278 Open in IMG/M
Scaffold IDGa0310345_10021288 Open in IMG/M
Source Dataset NameMarine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5431
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location NamePacific Ocean: North Pacific Subtropical Gyre
CoordinatesLat. (o)22.7719Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026408Metagenome / Metatranscriptome198Y
F063091Metagenome130Y
F072251Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0310345_1002128812F072251GAGGVSHKLIMESWRKFLKEGISDVVYHYTSGINKAAKILEDNKFMASGGFTKQVETELGKGKLYYFSTARTPVNAYTGTHPQGAIFKLDGRALSQKYKGVPLDYWATSKHSSKRPALISRYGKDAPSDSFEAEDRILLDEPYIDDADTYIDEIHFAVPLYSKGKDYFSGEMKTKTSKYIEWYN
Ga0310345_100212884F063091AGGAMIYKSLILLVFANLFNQAYNVEQIQCPRWLPGTNQILSQGVSLSPELELENRVRCYCEVVKTKEAECLARYVPASICKARTRAWVRDNLSIKEGFQLVNDVAPAPRRDRMISLEP
Ga0310345_100212885F026408AGGALNRRGMTLLLVLVMCSFIGMSAMLLFSTVHTESMIAGNTHRINQAKISASSGLSHFTALGLTYDTLREQADGLQTLQILPETQLGAKTSYEVKVHFYPRLSERQYVVESTGYYKKGERIISAHSIKALFEGDQ
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