NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310345_10035272

Scaffold Ga0310345_10035272


Overview

Basic Information
Taxon OID3300032278 Open in IMG/M
Scaffold IDGa0310345_10035272 Open in IMG/M
Source Dataset NameMarine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4221
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location NamePacific Ocean: North Pacific Subtropical Gyre
CoordinatesLat. (o)22.7719Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015796Metagenome / Metatranscriptome252N
F040143Metagenome162Y
F103406Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0310345_100352721F040143N/AILVIILLASDCTNAPNGAINIPYKQPIRYELVEPLGTKHSYREQPLVGKSYYCFIHEAPEIIWEDRGIMKVRTWTGPKFR
Ga0310345_1003527210F015796AGGAMNKYQMKKYDDTRDRVLIREWFKLKGVVLEHGSKYGVDLEGKDYDIEISHLSFDRLWNQWKKENRFRIEIRKRNHYWDGIYNESNTTHFVQLNKSGYELLVYPQDLIMEYSNNEVELGYLRSKGFNLKERTFMSIPFNKGKDVIKRYEI
Ga0310345_100352722F103406GAGGMFEELLNRLTAILLSIEDDVPSDVVIELEDIINSIENSKCKNDMFCGMDKKW
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