NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310345_10041921

Scaffold Ga0310345_10041921


Overview

Basic Information
Taxon OID3300032278 Open in IMG/M
Scaffold IDGa0310345_10041921 Open in IMG/M
Source Dataset NameMarine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3878
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location NamePacific Ocean: North Pacific Subtropical Gyre
CoordinatesLat. (o)22.7719Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007121Metagenome / Metatranscriptome357Y
F009987Metagenome / Metatranscriptome310Y
F025588Metagenome / Metatranscriptome201N

Sequences

Protein IDFamilyRBSSequence
Ga0310345_1004192110F009987GGAGGMIGSIIGNALGLGLKIMDKVERNSDKDSFEEFKARKKEMDNTLADADVEGIDSMFEYLADRARAGKTGRK
Ga0310345_100419212F025588GAGGMKTYDKFKKELTEDGMLHGEYGTEKPSTQLYYSPNDPEIVRTASNTMTVPKYRLSEDGKGCNHTCAHWRDSSYCAEYYFKCDSTYTCDSWKDSGI
Ga0310345_100419216F007121AGAAGMLKTILLTVLLLFGFTTPALGGWQIVLQDGLQEPSLDKLIDWVPEEVPRTVSFYFDTDADGKFDIKIAYSLIEAFPCRKNCVSRITDNGDHWLLPAPGINYYVVKRWIVYRYVDDEDWRGLDKTQQWIFEYPYNDDWLREKFYPLWPDQMK
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