Scaffold Ga0310345_10052878

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0310345_10052878

Scaffold Ga0310345_10052878

Overview

Basic Information
Taxon OID	3300032278 Open in IMG/M
Scaffold ID	Ga0310345_10052878 Open in IMG/M
Source Dataset Name	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3461
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Gimesia → unclassified Gimesia → Gimesia sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location Name	Pacific Ocean: North Pacific Subtropical Gyre
Coordinates	Lat. (^o)	22.7719	Long. (^o)	-158.0	Alt. (m)		Depth (m)	500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F105322	Metagenome	100	N
F105892	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310345_100528784	F105322	GAGG	MIDYDEVPDAEWSLSRIDIKDIIDKYPDKVVDVIDRGRDVLIVMDTCKLILRK
Ga0310345_100528785	F105892	AGGAG	MRIIQTSNYDMFELIDSNRPINPTKVDRMRERIKTKNLTSGYHIIVNSKEAGKKRYGTDGTKYPIVDGQHRFLSCKLEGQKFYYQVNDDIELDDIPTAASLQNSWKITDYLHHYTSIGVHEYKKFVGYMKRYGFPPSAALIILCGDRGSAKLHELKRGELKITRSWALANNFGDATDSLGRYINFNKQARFIEAFFVVFTNSDYKHERMIAKLEYLSSKMLRCSDMRDHLEQIEYIYNYNSKDKVKLNTMRDYND

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