NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310345_10064667

Scaffold Ga0310345_10064667


Overview

Basic Information
Taxon OID3300032278 Open in IMG/M
Scaffold IDGa0310345_10064667 Open in IMG/M
Source Dataset NameMarine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3133
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location NamePacific Ocean: North Pacific Subtropical Gyre
CoordinatesLat. (o)22.7719Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000245Metagenome / Metatranscriptome1468Y
F002715Metagenome / Metatranscriptome535Y
F005516Metagenome398Y

Sequences

Protein IDFamilyRBSSequence
Ga0310345_100646671F005516GAGMKSFKRYLTEFASYSTSDLVFMNNGQGSASSGLMIPLSGPMFKRIWPDTIRTTVFHVLSAYDIYKLKKLEGGKKTISAFFTMMSRYLESGIAGGGGIVAEMEADVIVSAADDIMSQVDNKGRRWVEVSWFANAQRGGTGPKFAVVERELNDLIRNLVVKHLEPIIGNRARTEHEYVLWGNMKREL
Ga0310345_100646672F000245GGAGGMKTFSRFKESKLDDKLDKLVSNEIKKRKLAKFPVNATDDIKMRMKPNKPVFKFPSPSGDMMIHVFLRKMAPPAKKHTMAFNYQLEDK
Ga0310345_100646674F002715AGGAMAEEELQSVKLEVGLLKNEVEVRGKQVETLLQKLDLTTDKLQQLTVQIIKLNTRQEDYLRHSSSMSEEFKILHTRIGDLHDKQLAANKEIEQRLDRLDQYKSKLMGMIIVVGGVVGTIVATAVAHFKD
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