NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310345_10098089

Scaffold Ga0310345_10098089


Overview

Basic Information
Taxon OID3300032278 Open in IMG/M
Scaffold IDGa0310345_10098089 Open in IMG/M
Source Dataset NameMarine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2559
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location NamePacific Ocean: North Pacific Subtropical Gyre
CoordinatesLat. (o)22.7719Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005749Metagenome391Y
F013775Metagenome268Y
F015023Metagenome258Y
F041256Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0310345_100980892F015023GAGMNTTFKHIDLNDSVDDFMNHLNNNMDKPDGYSYDLVTRGSKYFKVVMNTRGSRSVYCFINKRNGEILKSAGWSAPAKGSRGSVLVPDSYTNSDWSGGWLYKIFGNCYNGSGNTIG
Ga0310345_100980894F041256AGGAMNLNEYLIENDRHIGDVVLLFSVGTALDKISGDTFPMLVGGKIGVDEPMNLMEMDISDDSWEWYNSLAFGEKEIVDEVMFDLSYEELVLGNK
Ga0310345_100980895F013775AGGAMVEKRQYETVKEFAKDYRTEIIPMLKSKGFTLSISTSKGSYWNDGRMNFQIKKIPSNFYVWTNEYSRYNKTEKSIKLLNTIRDRVRNLLLSTDLDVDLNFDYHKNVRYKTIPEGWDDEQN
Ga0310345_100980897F005749AGGAGMKKKSWLLMMSFDEHDSSSNEIKTLYHGKTKRNMVKTMDLFQDMNEHLVLALVEVDKKSTYDKIVDKEGSEEMFFMDSKSNWNNGKTYEDLKEEA
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