Basic Information | |
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Taxon OID | 3300032278 Open in IMG/M |
Scaffold ID | Ga0310345_10102548 Open in IMG/M |
Source Dataset Name | Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2504 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean: North Pacific Subtropical Gyre | |||||||
Coordinates | Lat. (o) | 22.7719 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 500 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F064782 | Metagenome / Metatranscriptome | 128 | N |
F067816 | Metagenome / Metatranscriptome | 125 | N |
F095325 | Metagenome | 105 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0310345_101025484 | F067816 | AGGA | MTMDVYYEDKTGSIPAVEVDIILVLADYESANLSAPSARREIARKVHSMLLKKNYVIRQKRDSGT |
Ga0310345_101025486 | F064782 | GAG | MDLKAEAVLKNIRKEIQKIRDRNRKMKNHPYAENTMVMIGLMRAVDIVEELRNDEMEKLIDWRVEQKKLISN |
Ga0310345_101025488 | F095325 | AGGA | MNEEQQPDWDNINRGKVRHFFALELYKYKLRNSDKAHLKPTEIGTIEMYVEYVMNGAEFRDVIKEESALALMSRKECEDIITGRLGDIDSVTAEEHARAIIHLEADGLKDNDLKAVLEALDAGKINQGNLKASVDKISNIKSEYDKE |
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