Scaffold Ga0310345_10121861

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0310345_10121861

Scaffold Ga0310345_10121861

Overview

Basic Information
Taxon OID	3300032278 Open in IMG/M
Scaffold ID	Ga0310345_10121861 Open in IMG/M
Source Dataset Name	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2303
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location Name	Pacific Ocean: North Pacific Subtropical Gyre
Coordinates	Lat. (^o)	22.7719	Long. (^o)	-158.0	Alt. (m)		Depth (m)	500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005749	Metagenome	391	Y
F013775	Metagenome	268	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310345_101218611	F013775	N/A	AKDYRTEIIPMMKSKGFTLSINTSKGSYWNDGRMNFQIKKVPSNFYVWTNEYNRYSKTEKSQKLLKVIRDRVSNLLLSTDLDVDLNFDYHKNVRYKPVPEGWDTNEV
Ga0310345_101218615	F005749	AGGAG	MKKSWLLIMSFDEYDGSPNEIKTLYHGKTKRNMVKTMDLFQDMNEHLVLALVEVDKKSTYDKIIDKEDSEEMFFMDSKSNWNNGKTYEDLKEEALEEMLMGSLIKGDMGYA

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