NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325403_1005046

Scaffold Ga0325403_1005046


Overview

Basic Information
Taxon OID3300032354 Open in IMG/M
Scaffold IDGa0325403_1005046 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12392
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002798Metagenome529Y
F006456Metagenome372Y
F053678Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0325403_100504611F002798N/AMISINREDKIQFIKDGLSKGSLDNLLLTLETHLSGDVHRAIHDLWPHFHKEHDQLSLGNLIKKDPVCQFLRKLDGKPIPDP
Ga0325403_100504612F006456N/AMDTALEKLKNYFPALPQNAITKIYRARCVRLRLLMNHEIPEDIHWLIKAEVQLSGESYSFISYMPGTGKSTFAKKRRAK
Ga0325403_100504615F053678GAGMIELMCNGTFKDKNPNKAMEYLDLLAENAQNWDTTGTYEAPSKTQPHTSSGGMYNLR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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