NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325403_1088748

Scaffold Ga0325403_1088748


Overview

Basic Information
Taxon OID3300032354 Open in IMG/M
Scaffold IDGa0325403_1088748 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1429
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002704Metagenome535Y

Sequences

Protein IDFamilyRBSSequence
Ga0325403_10887483F002704GAGMDGSKGHNFQSDRWIAIKLLLEFPDELFNGVHEESILDDDEVWSSQAGWTVRKAITFDPTVGSRSNFYRSFRMHFSMEWMRNRYSLMMRSGRARLDGRFERP
Ga0325403_10887484F002704GAGMDGSKGHNFRSDRWIDIKLLLEFPDALLHGVDEESILDDDEVWSSQAGWTVRKAITFYPTVGSRSNFYWSFRMNFSMEWIRNRYSMMMRSGRARRDGRFESP
Ga0325403_10887485F002704GAGMDGSKVHNFRSDRWIAIKLLQEIPDALFHGEDEESILDDDEVWSSQAGWTVRNAITFHPTVGSGSNFYWSFRMHFSMEWMRNRYSMMMRSGRARLDGQFARP
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