NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325403_1119752

Scaffold Ga0325403_1119752


Overview

Basic Information
Taxon OID3300032354 Open in IMG/M
Scaffold IDGa0325403_1119752 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)895
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008225Metagenome336Y
F012319Metagenome281Y

Sequences

Protein IDFamilyRBSSequence
Ga0325403_11197521F008225N/ADLGVCRESVFVNDFXFCSSLCGLKISASAVELCSGEDLRVCSESVFVNDFXFCNSLCAMRISASAGELCSGEDLRVCSESVFVNDFXFCSSLCGLKIXASAVELCSGEDLWVSSQSVFVNDFFFCSSLCGLKISASALELCSDEDFWVC
Ga0325403_11197522F012319N/APEHSSPAEAEIRMAQRLLQNQKSFTKTDSLQTRKSSPEHSSTAEAEIFRPQRLMQNQKSLTKT
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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