NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325401_1035401

Scaffold Ga0325401_1035401


Overview

Basic Information
Taxon OID3300032355 Open in IMG/M
Scaffold IDGa0325401_1035401 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4240
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008251Metagenome336Y
F016904Metagenome243Y
F040184Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0325401_10354012F016904N/AMLLIKPKDTRIQKRRLKSNLSILWLSLVDQFMQLIEGSITGMKDCSWSINCSVVATEIMICHAKDVKNSCSTA
Ga0325401_10354014F040184GAGMQSYHLYVGQLESHSLSLSLYLFILKKHVYVQVVVIVAHIFPWFYVQERLKRPLWVEDRLPIQFF
Ga0325401_10354015F008251N/AMDTTLEKLKKYFPALPPNAIAKIYRARCARLRLLMNHGILEDILWLIEAKVRLSGESSNSFISYMPKTGKSNFAKKRCAKRLKLYHRCAKWTCNAQCRSLGMVSINRKDKIQFIKEGLSKGSLDNLLLTLETHLSGDVHRAIHDL
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