NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0325401_1091501

Scaffold Ga0325401_1091501


Overview

Basic Information
Taxon OID3300032355 Open in IMG/M
Scaffold IDGa0325401_1091501 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1746
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008225Metagenome336Y
F010037Metagenome309Y

Sequences

Protein IDFamilyRBSSequence
Ga0325401_10915011F010037N/AMRKHXRKLILCRPGNPHENPVRRLKLKSSRQIDYCRIGNNXRKLIRRRPTNPDQNTVLRQKLKSSWHKDYCRIRNYXRKLIRWRPRNSDENPVLRLKLKSSGHIDYCRIRNNXXKVIRRRPTNPDQNTVLRQKLKSSWHKDYCRIRN
Ga0325401_10915012F008225AGTAGMWPQVSVSAIEPGSREDFRVCRESGLVNYFXFCSSLCGLRISASAVELCSGEDLWVCSESVFVNYFXFCNSVCGLKILASTVELCSGEDLWVCSESVFVNDFRFCSSLCGLKISASAVELCSDEDLCVCSESGFVNYFXFCSSLCGLTISASVVEPGSRDDFRVCSELVFINDFXFCSSLCGLKISASVVEPGSRQDFWVSSESVFVNNFXFCSSLCAMKISASTVELCSDEDLWVYGESVFVNYFXFCS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.