NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308414_1025088

Scaffold Ga0308414_1025088


Overview

Basic Information
Taxon OID3300032356 Open in IMG/M
Scaffold IDGa0308414_1025088 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2904
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012577Metagenome / Metatranscriptome279Y

Sequences

Protein IDFamilyRBSSequence
Ga0308414_10250881F012577AGGAGMLVAIAKPHQQFPVPLTIADYEFSTSDDGDERGRVTLPPGYARSGVMTQIGDELFIYCTQLSKTIWRGQVERIEEARDGSITWHALGFGALQRDARVSVVLNMDDMTRWKPVGSEFMPNSGFSSRGDLWEYEIDEAGGFLNVRIRTKRTFAVYHTTLFFLAYLYEQPERYAYLSTSEQISVFLHSVTGLATGVWVAPVTAIPSPNAYTLTLGTFTGLTANGVVSATGPFGWVIGIRVNAGNETTIGATSVTFRATINAQNINAILLTNALNGSGGCCEIKLPSSTSAKITKNDANLRDIIEQSLTTSVRYHKKRFLRDRTDPTIDFLTDSTLVWRFPETTRVIDISKAPNRVYGQYRGYWTGHLTTTTSITSLEKRRQLAWRVAGVGEYGSKTAAEERRNEAAVELDQQIAPMTVDLDNTRYELMMREGVTVPNWAADVSDYVIVPGYFR
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