NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315334_10004160

Scaffold Ga0315334_10004160


Overview

Basic Information
Taxon OID3300032360 Open in IMG/M
Scaffold IDGa0315334_10004160 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9153
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (56.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007665Metagenome347Y
F033218Metagenome / Metatranscriptome178Y
F049698Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0315334_1000416012F049698AGGVNKKAYAFFLKKNRKKNPVAKDLSDGRYHQRVVKDKTKYSRKEKHGQTDRHYKHSDSSEAST
Ga0315334_1000416017F007665AGGMKYKTLKFLRKRKIARERIRTTEKGIQALIIILVLAVLLLAGCSYRMVPNETKIEYGTTETDAKNSKLQEKKFITQTWKWR
Ga0315334_100041606F033218N/AMGQPKTKKIICPRCTGNGYFKVKESAERPVDQVVQCPMCNSQGEIDEDKASSIYVDADGLHRMH
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