Scaffold Ga0325400_1017871

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0325400_1017871

Scaffold Ga0325400_1017871

Overview

Basic Information
Taxon OID	3300032374 Open in IMG/M
Scaffold ID	Ga0325400_1017871 Open in IMG/M
Source Dataset Name	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6704
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Weissella → Weissella confusa	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	32.1348	Long. (^o)	-81.9657	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002865	Metagenome	524	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325400_10178716	F002865	N/A	VTGRLKQKSSLVVYLPAFGFSGSFLXGHVCFLEFTFRKITFQTFLYLFVIRKVGQQKTLSSQRKIWFGFQESIFSFSCVCFPESDFRETTFQTFLCLFTIRKVGQRKTLSSQRKIWLGFQESVFLENLSGKHFPEVMKNLEMSLFVNYIKCDPQTFDCYI

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