NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325405_1000001

Scaffold Ga0325405_1000001


Overview

Basic Information
Taxon OID3300032389 Open in IMG/M
Scaffold IDGa0325405_1000001 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)290085
Total Scaffold Genes254 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)114 (44.88%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000433Metagenome1147Y
F028370Metagenome191Y
F038522Metagenome165Y
F088134Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0325405_100000148F000433N/AMVFQFGLNHHLFSKLNPLFIFLISVVKLINQSFDLYDRPAFKMNIYHKLKLSYIIRHVILKHALVKQLLILQLQNYDIKP
Ga0325405_100000179F038522N/AMQIRIIIEHKNSYSHQKQICSYIKKEKREFLYLFLEIKRETPKFQEPIPD
Ga0325405_100000180F028370N/AVLYVNGKVDESGQFQLLTFKEILGRRMKELGSSSFIEIVVLDVY
Ga0325405_100000181F088134N/AMKSGRPKSAIFKFKAWPKKRSQNLSCNPAQTLLRSLPIARVLEGKMTSNLVGEKIRQFPTTFMRTTCSSSDVTNDILSRQELEGYPQEALLSLLAISRFIVI
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