NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325405_1000031

Scaffold Ga0325405_1000031


Overview

Basic Information
Taxon OID3300032389 Open in IMG/M
Scaffold IDGa0325405_1000031 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)119663
Total Scaffold Genes120 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)71 (59.17%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012641Metagenome278Y
F012990Metagenome275Y
F026216Metagenome198Y
F037802Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0325405_100003134F026216N/AMCSMYENIDDTAFIERKQYSVIMLKVNFLGLGLLLFFLFSLFFNIYTYNLKHNASLTHVMSFRLMTPRSVGLRALGVETPLRA
Ga0325405_100003158F037802GGAMLCVSEKVDESRQIRLLIFRENSSGRMRELGSGYFIEIVVVGVE
Ga0325405_100003165F012641N/AMDFLNTTKIIFLHFWILQHVCKTPKGIAQYSKKYKNLILGGIHLLFTANVWIKKSLKDEYPKYY
Ga0325405_100003179F012990GGAGMEGAVSLDNSTGAEIHGDGIVCLDCFVEASSHNISLDDLSIRDCTCWKRDHIYSGAVR
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