NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325405_1000129

Scaffold Ga0325405_1000129


Overview

Basic Information
Taxon OID3300032389 Open in IMG/M
Scaffold IDGa0325405_1000129 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)70139
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (25.45%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000201Metagenome1621Y
F001358Metagenome715Y
F001798Metagenome632Y

Sequences

Protein IDFamilyRBSSequence
Ga0325405_100012921F000201N/AMVALKMSIYQKLKLSYIIRLFIIKHALVKELLILQVQNDDIKP
Ga0325405_100012922F001798N/AMQWPTIDLVDLVDSNTQAFWLDEMTLMQSEFGKMFFIKVVGNHLLFPPTTFQSIWITTTQDMAKILSSASGGRGG
Ga0325405_100012930F000201N/AMVAFKMSIYHKLKLSYIIRFVIIKHALVKELLILQVQNDDIKP
Ga0325405_100012936F001358N/AVLGLSAKICPKAFSLVATLDPRVIFIILIIILNLHDSSLSECDCNTRPKSLECEFGYKVV
Ga0325405_10001297F001798N/AVDLVDSSTQALWLDEMTLIQSEFGKEFFMKVVGNHLIFPHITFQSIWITSARYIASSAVGGRGG
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