NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325405_1000158

Scaffold Ga0325405_1000158


Overview

Basic Information
Taxon OID3300032389 Open in IMG/M
Scaffold IDGa0325405_1000158 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)64271
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (47.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028370Metagenome191Y
F038522Metagenome165Y
F094629Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0325405_10001582F028370N/AVFCVNGKADESGQFRLLTFKEILDRRMKELGSSSFIEIVVLDVY
Ga0325405_10001584F038522N/AMQIKIIIEHKYSYSHQKQICSYVKKEKREFLYLFLQIKRKTPKFQEPIPD
Ga0325405_100015869F094629GGGGGMQIRKIIEHKYSYSHQNSAAIVRKEKREFLYPFLQNQERNTKISRTHPRLRVYKWNKHLWARD
Ga0325405_100015870F028370N/AVLCVNGKVDESGQFRLLTLRGISSRRMNELGSGSFKEIVVSDVD
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