NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325405_1000213

Scaffold Ga0325405_1000213


Overview

Basic Information
Taxon OID3300032389 Open in IMG/M
Scaffold IDGa0325405_1000213 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)54803
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (45.45%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002589Metagenome545Y
F024004Metagenome207Y
F052698Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0325405_10002131F024004N/AMNLNLNLKSSIACENKTNLGGFQVQNMFFLDCPTMIALDFCVRRYGCFKFGLFMLERSK
Ga0325405_100021322F002589N/AVLGLSAKLYPSVLGLAATPDLGVIFIILIITLNLHDPSLSWFGCNTRPNSLRCGSGCKVM
Ga0325405_100021328F052698AGAAGMISNSYPGKMRQFPRTFMIEVCLNYDVINDVFGKQEDKNCHQVKIWPPIHQLVNKSIVPNFSL
Ga0325405_100021329F052698AGAAGMISNSYPEKMRHFPRTFMIEICSNYDVINDVFGRQEDKNCYQVKMWPPIHQLVNKLIVPNFGL
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