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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032389 Open in IMG/M |
| Scaffold ID | Ga0325405_1000285 Open in IMG/M |
| Source Dataset Name | Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 47725 |
| Total Scaffold Genes | 31 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (35.48%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 32.1348 | Long. (o) | -81.9657 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F026216 | Metagenome | 198 | Y |
| F037802 | Metagenome | 167 | Y |
| F038486 | Metagenome | 165 | Y |
| F083463 | Metagenome | 112 | Y |
| F087988 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0325405_10002851 | F037802 | AGG | MLCVNGKVDESGQIRFLTFGENSSRRMRELGSGSLTKIVVLDVD |
| Ga0325405_100028521 | F083463 | N/A | MQIRIIIEHKYSSSHKKQICNYHKERKEGVFIFIFTNQDRNTKISRTHPRLKVIGRINTGGGGEGINKEKLSKKKRGEGRLLLERKRGIETLIHTG |
| Ga0325405_100028522 | F038486 | N/A | MQLMEHSTNNLNVNMIPFPTRTILDGEIIPTYTIGTHLNEAIKADSSIPMDFNPNRIIKQDNPLHLQTPMLWGHHPMMIFVR |
| Ga0325405_100028525 | F026216 | N/A | MAFLGRKQNCVLMFKVNFLELGLLSFFSLCFFNIYTYNLKHNASLTHVTSFRLMTPRPVGLRALDVETPLRA |
| Ga0325405_10002857 | F087988 | N/A | MVLSHLQYTEYEVSIDSKVVCLWFTKSSVFEAELNLELKSQANNIIMSLNFTYDAISLLI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |