NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325405_1002511

Scaffold Ga0325405_1002511


Overview

Basic Information
Taxon OID3300032389 Open in IMG/M
Scaffold IDGa0325405_1002511 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18881
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (39.13%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000510Metagenome1067Y
F006830Metagenome363Y
F038486Metagenome165Y
F038922Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0325405_100251116F006830N/AMDTTLEKLKKYFPTLPQNAITKIYRARCARLRLLMNYGIPEDIR
Ga0325405_10025112F038486AGGMEDSTDSSSVNTIPFPTRTILDGEIIQTYDMGTHLKKAINADNSIPMDFNPNRIIKQDSPLHSQTPMLWGRHPVMIFVR
Ga0325405_100251122F038922N/AMGSTPFLLYTILCVVFEARVINLFDCDIATNFGAVAGEVILVDSCACTVIFICCDSKKKEKQNFCLQRCYSLAAVVLFKTEFLVELGIGLLFPEGK
Ga0325405_10025114F000510N/AMLFRLKQKKTEKYQAKLKKIRKLSREQTLVASTHPPTEIRTDHGNETSIYIMNIYLFLTLLN
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